immuneML & Galaxy
=================

.. meta::

   :twitter:card: summary
   :twitter:site: @immuneml
   :twitter:title: immuneML & Galaxy
   :twitter:description: See tutorials on how to run immuneML through Galaxy.
   :twitter:image: https://docs.immuneml.uio.no/_images/receptor_classification_overview.png


All of immuneMLs functionalities are also available through `a Galaxy web interface <https://avant.immuneml.uiocloud.no>`_ as a collection of Galaxy tools.
The immuneML Galaxy tools provide simplified, button-based interfaces to get started running different types of immuneML analyses,
or can alternatively be run with a YAML input file to specify all parameters.

.. toctree::
  :maxdepth: 1
  :caption: Galaxy tutorials

  galaxy/galaxy_intro
  galaxy/galaxy_tools
  galaxy/galaxy_immunologist_friendly

..
   _Note: galaxy_import_remote_data is currently not linked in the docs, should be linked once those tools are made available on new galaxy server