Use case examples

This page provides examples on how LIgO can be used to validate AIRR-ML approaches. All use cases assume you have LIgO already installed. For details on how to do that, see Installing LIgO.

The LIgO manuscript showcases LIgO on two use cases. The following sections provide a description of how to reproduce these use cases.

1. Manuscript use case 1: Out-of-distribution receptor-level simulation using LIgO

2. Manuscript use case 2: Limitations of conventional encoding schemes for repertoire-level binary classification when immune signals co-occur within the same AIR

List of all usecases

• Manuscript use case 1: Out-of-distribution receptor-level simulation using LIgO
• Manuscript use case 2: Limitations of conventional encoding schemes for repertoire-level binary classification when immune signals co-occur within the same AIR